Microbiome Testing Benefits: Stop Probiotic Guessing

You’ve spent over $500 on probiotics this year. Some bottles did absolutely nothing. Others made your symptoms worse. 

You’re not alone in this — and there’s a reason why nothing’s working.

Here’s what’s actually happening: you’re taking probiotics designed for someone else’s microbiome, not yours. 

It’s like taking random medications and hoping one of them works. 

These microbiome testing benefits change everything by revealing your actual bacterial profile — both in your gut and in your mouth, where your health journey really begins.

Then, and only then, can you choose supplements that actually work for YOUR body.

In this article, you’ll discover why generic probiotics fail without testing, how your oral and gut microbiomes work together (or against you), and which type of comprehensive microbiome analysis actually gives you answers. 

By the end, you’ll know exactly which testing approach makes sense for your situation — and how to finally choose supplements that actually work instead of wasting money on ones that don’t.

Ready to stop guessing and start healing with targeted solutions? Keep reading, because what you’re about to learn could save you years of trial and error.

Key Takeaways

• Up to two-thirds of people show no evidence that probiotic supplements successfully colonize their digestive tract¹
• You swallow approximately 1.5 liters of saliva daily containing 100 million to 10 billion microbes that directly impact your gut microbiome²
• Oral microbiome dysbiosis can colonize your gut, especially when gut health is already compromised³
• Comprehensive gut testing reveals food sensitivities, gut permeability markers, and candida overgrowth — giving you a personalized supplement protocol that actually works
• Oral microbiome testing identifies which bacteria are causing dental issues so you can use targeted oral care strategies
• Generic probiotics fail because they don’t account for YOUR specific bacterial imbalances — but testing reveals exactly which strains you need
• Testing eliminates expensive trial-and-error and shows you which supplements will actually work for your unique microbiome

Why Your $50 Probiotic Bottle Isn’t Working

Look, I’ve seen this pattern hundreds of times in my practice. 

Someone comes in with digestive issues, brain fog, and chronic fatigue. 

They pull out a bag full of probiotic bottles — 10, 15 different brands. Random strains from health food stores or Amazon. 

No testing. No strategy. Just hope.

One of my patients, Mary Ann, struggled with health problems for 35 years. 

She tried everything — different practitioners, multiple protocols, countless supplements. 

She kept asking herself, “Will anyone ever find out what’s wrong with me?”

That’s the fear, right? That you’ll keep spending money and time, and never get real answers.

Here’s the reality: probiotic supplementation without testing fails for most people because it’s not personalized. 

Research shows that up to two-thirds of people are “resisters” — their bodies simply expel probiotics rather than allowing them to colonize their digestive tract.¹

Only a small number of people, the “persisters,” actually see probiotics establish themselves in their gut.

The difference between resisters and persisters? Their baseline microbiome composition and gene expression profiles.¹ 

In other words, whether a probiotic works for you depends entirely on what’s already living in your gut — something you can’t know without testing.

This doesn’t mean probiotics don’t work. 

It means you need to know which strains YOUR body needs before you start taking them. 

When you choose probiotics based on your actual test results, showing your specific deficiencies and overgrowths, that’s when supplementation actually works.

But here’s what most people miss: your gut microbiome test accuracy depends on looking at the complete picture, and that picture includes understanding both your gut and oral ecosystems.

Your Mouth Is Your Gut’s Front Door

Every single day, you swallow approximately 1.5 liters of saliva containing 100 million to 10 billion microbes.² 

Think about those numbers. Millions to billions of bacteria flowing from your mouth into your digestive system daily.

If your oral microbiome is in dysbiosis — meaning you have more harmful bacteria than beneficial ones — those bacteria flow directly into your gut. 

They don’t just pass through harmlessly. 

Research shows that oral bacteria can actually colonize the gut, particularly when the gut is already dealing with dysbiosis or compromised barrier function.³

The oral-gut microbiome axis is now recognized as a bidirectional highway.⁴ 

What happens in your mouth affects your gut. What happens in your gut can affect your mouth. 

They’re not separate systems — they’re interconnected.

Studies have found that people with higher amounts of oral microbes in their gut tend to have more chronic disease across the board.⁵ 

These oral bacteria are almost all associated with inflammation when they show up in gut microbiome samples.

Your stomach acid is supposed to protect you from this bacterial influx, acting as a barrier.² 

But when stomach acid is low, when you’re under chronic stress, or when your gut is already compromised, oral bacteria bypass this defense system and set up shop in your intestines.

This is why comprehensive microbiome analysis needs to consider both ecosystems. 

You can’t fully understand your gut health and energy levels without looking at where the bacterial journey begins.

The Two Types of Microbiome Testing You Need to Know About

When we talk about “should I get microbiome tested,” we’re really talking about two separate ecosystems that each need their own assessment. 

While these are distinct testing approaches for different health concerns, it’s important to understand that these ecosystems are deeply interconnected — what affects one often influences the other.

Gut Microbiome Testing: For Your Digestive Symptoms

This testing is specifically designed to address gut-related issues. Comprehensive gut testing reveals:

• Food sensitivities (IgG reactions, not allergies) — the FIT 22 test covers 22 foods, upgradable to FIT 176 for more detailed analysis
• Gut permeability markers like Zonulin, Occludin, and LPS that show if you have “leaky gut”
• Candida overgrowth markers that explain why you’re craving sugar, fatigued, and feeling foggy
• Your actual bacterial profile — which strains are overgrown, which are deficient, which are missing entirely

This type of testing answers the question: “What’s happening in my gut RIGHT NOW that’s causing my digestive symptoms, fatigue, and inflammation?”

Get this testing if you’re dealing with digestive issues and chronic fatigue, brain fog and anxiety, bloating, unexplained inflammation, or any gut-related symptoms.

Oral Microbiome Testing: For Your Mouth Health Issues

This is completely separate testing that addresses oral health symptoms. The Gateway to Health Orobiome Testing Package analyzes:

• Your oral bacterial profile through saliva sampling
• Which bacteria are causing bleeding gums, bad breath, or recurring cavities
• Personalized oral care protocols based on your specific bacterial imbalances
• Prevention strategies for oral health issues before they worsen

This testing makes sense if you’re dealing with persistent bad breath that won’t go away, bleeding gums when you brush or floss, cavity after cavity despite good oral hygiene, or chronic dental problems.

Here’s what most people don’t realize: research shows that oral dysbiosis doesn’t just affect your mouth — it can contribute to systemic diseases including cardiovascular disease, diabetes, and even cognitive disorders because those bacteria travel throughout your body.⁴^,⁶^,⁷

Can You Get Both? Absolutely.

Many people have BOTH gut symptoms AND oral health issues. 

That’s not coincidental — the oral-gut axis means these two ecosystems influence each other. 

If you’re dealing with digestive problems AND dental issues, getting both tests gives you the complete picture of what’s happening in both ecosystems so you can address both simultaneously.

What Testing Results Reveal

Here’s what changes when you have data instead of guesswork:

Scenario 1: You discover you’re reacting to “healthy” foods.

Gut testing reveals you have IgG sensitivity to eggs, almonds, and spinach — three foods you eat daily. 

No wonder your gut inflammation never improves. 

You’re constantly triggering your immune system with foods you thought were helping.

Scenario 2: You discover which probiotic strains you actually need.

Your gut test shows you’re overloaded with certain Lactobacillus strains but deficient in Bifidobacterium and Akkermansia. 

The probiotic you’ve been taking? Mostly Lactobacillus. 

You’re feeding an overgrowth. 

Now you can choose a targeted probiotic with the specific strains you’re deficient in — and finally see results.

Scenario 3: Your oral bacteria are causing systemic issues.

Your oral microbiome testing reveals dysbiosis with specific pathogenic strains causing your chronic bad breath and bleeding gums. 

But here’s what you didn’t expect  —those same bacteria are also contributing to your fatigue because oral bacteria can affect your whole body, not just your mouth.

Scenario 4: You need both ecosystems addressed.

You get both tests done. Your gut test shows food sensitivities and leaky gut. Your oral test reveals pathogenic bacteria that keep causing cavities. 

Now you have a complete roadmap to address both — resolving your digestive issues with targeted gut protocols AND fixing your oral health issues with personalized oral care. 

This is microbiome testing vs probiotic guessing. 

Testing gives you personalized roadmaps for both ecosystems.

Guessing is throwing darts blindfolded and hoping something works.

Making the Testing Decision

So which testing approach makes sense for you?

Get gut testing if you have:

• Digestive symptoms like bloating, gas, constipation, or diarrhea
• Chronic fatigue that won’t improve
• Brain fog, difficulty concentrating, or mood issues
• Suspected food sensitivities causing reactions
• Candida overgrowth symptoms like sugar cravings
• Inflammation or autoimmune symptoms
• Gut permeability testing needs

Get oral microbiome testing if you have:

• Bad breath that won’t go away no matter what you try
• Bleeding gums when you brush or floss
• Cavity after cavity despite brushing regularly
• Chronic dental problems or gum disease
• Wake up tired even with full sleep (can be oral bacteria related)

Get BOTH tests if:

• You have symptoms in both categories
• You want a comprehensive picture of both ecosystems
• You’re dealing with systemic inflammation (oral bacteria can be contributing)
• You’ve addressed one area but symptoms persist

Remember, these are two separate diagnostic tools. 

Gut testing reveals your gut microbiome and helps resolve digestive issues. 

Oral testing reveals your oral microbiome and helps resolve dental/oral health issues. 

They’re not either/or — they address different symptoms in different ecosystems that happen to influence each other.

Stop Guessing, Start Targeting Your Supplements

Every month you spend on random probiotics without testing is money that could be going toward supplements that actually work for YOUR unique microbiome. 

The average person trying to “fix their gut” spends $500+ annually on supplements chosen by guesswork, not data.¹

Testing costs less than six months of supplement roulette, and it actually tells you which products will work for your body. 

That’s when supplementation becomes powerful — when it’s targeted, personalized, and based on your actual bacterial profile.

Your Next Step

Here’s the truth: your symptoms have a cause. 

Your digestive chaos has an explanation. Your energy depletion has a reason.

And once you identify the cause through testing, you can finally use targeted supplements that actually work for your body instead of wasting money on random ones that don’t.

Get comprehensive gut testing to identify exactly what’s triggering YOUR inflammation, YOUR food reactions, YOUR bacterial imbalances. 

Then use that data to choose supplements, protocols, and dietary changes that are designed specifically for you. 

Stop guessing. Start healing with precision.

Get oral microbiome testing to reveal exactly which bacteria are causing YOUR bleeding gums, YOUR bad breath, YOUR recurring cavities. 

Then use those insights to implement targeted oral care, personalized protocols, and preventive strategies that are designed specifically for your mouth. 

Stop suffering. Start healing with precision. 

And if you want support beyond just testing, join The Urban Monk Academy free trial for ongoing community healing support, expert guidance, and proven protocols that work when you combine them with your personalized testing data.

These microbiome testing benefits aren’t just about knowing what’s wrong. 

They’re about finally having a clear path forward — including knowing exactly which supplements will actually work for YOUR unique microbiome — after years of expensive guessing games that got you nowhere.

Time to get your answers and make your supplements work for you.

Sources

1. Zmora N, et al. Personalized Gut Mucosal Colonization Resistance to Empiric Probiotics Is Associated with Unique Host and Microbiome Features. Cell. 2018. 
2. Baker JL, Mark Welch JL, Kauffman KM, McLean JS, He X. The oral microbiome: diversity, biogeography and human health. Nature Reviews Microbiology. 2024.
3. Kunath BJ, De Rudder C, Laczny CC, Letellier E, Wilmes P. The oral-gut microbiome axis in health and disease. Nature Reviews Microbiology. 2024.
4. Xu Q, Wang W, Li Y, Cui J, Zhu M, Liu Y, et al. The oral-gut microbiota axis: a link in cardiometabolic diseases. npj Biofilms and Microbiomes. 2025. 
5. Tanwar H, Gnanasekaran JM, Allison D, Chuang LS, He X, Aimetti M, et al. Unravelling the oral-gut axis: interconnection between periodontitis and inflammatory bowel disease, current challenges, and future perspective. Journal of Crohn’s and Colitis. 2024.
6. Rajasekaran, J., et al. Oral Microbiome: A Review of Its Impact on Oral and Systemic Health. Mircoorganisms. 2024. 
7. Maritan-Thomson, D. Links Between Oral Microbiome Imbalance and Disease. Multidisciplinary Digital Publishing Institute (MDPI Blog). 2024.